Figure 4 | Scientific Reports

Figure 4

From: Genomic analysis revealed a novel genotype of methicillin-susceptible Staphylococcus aureus isolated from a fatal sepsis case in dengue patient

Figure 4

Phylogenomic tree inferred by maximum-likelihood method from SNP-based core genomes alignment of the S. aureus strains representing different multi-locus sequence typing (MLST) clonal complexes. The multiple genome sequence alignments of 17 S. aureus strains were generated by the online tool REALPHY using S. aureus NCTC 8325 as the reference genome. An unrooted phylogenomic tree was inferred by approximately Maximum Likelihood method using Generalized Time-Reversible (GTR) model with gamma distribution rates and 100 bootstrap replicates. Bootstrap support value is indicated as a percentage at each node. The representative genomes for each clonal complex are denoted as clonal complex/sequence type (i.e. CC1/ST1 represents MLST sequence type 1 in clonal complex 1). The PubMLST ID and European Nucleotide Archive (ENA) reference numbers of the representative genomes are available in Supplementary Table S1.

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