Table 3 Phage-associated regions in the chromosome of the HS-MSSA strain.

From: Genomic analysis revealed a novel genotype of methicillin-susceptible Staphylococcus aureus isolated from a fatal sepsis case in dengue patient

Region

Region length (kb)

Region positiona (bp)

Ordered contig numbers

GC %

PHASTER annotation

Phage identityb (%)

PHASTER predictionc

PR1

51.5

379,258–430,819

13

31.6

PHAGE_Staphy_PT1028_NC_007045

9

incomplete

PR2

64.1

1,475,209–1,539,349

15, 4

32.5

PHAGE_Staphy_phi2958PVL_NC_011344

40

intact

PR3

60.1

1,978,784–2,038,945

11

31.8

PHAGE_Staphy_phiN315_NC_004740

52

incomplete

  1. aIdentified prophages were over multiple contigs that were concatenated for PHASTER analysis.
  2. bPhage identity was calculated based on the percentage of phage-associated genes over the total protein-coding sequences identified in the phage region.
  3. cA prediction of whether the phage region contains genes necessary for lysogeny.
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