Figure 5
Hierarchical clustering of CD8 T cell and CD4 memory activated T cell quantities in TCGA TNBC samples. RNA sequencing (RNA-Seq) gene expression data was analyzed with CIBERSORT to quantify the amount of different T cells in the TCGA TNBC samples. Hierarchical clustering of these quantities after normalization is shown in the heatmap. Clusters of samples enriched in CD4 memory activated T cells (deep pink cluster), CD8 T cells (green cluster), both cell types (magenta cluster), or neither cell type (orange cluster) are represented. Image generated with R’s (4.0.2) (https://www.R-project.org)35 gplots package (3.0.4) (https://CRAN.R-project.org/package=gplots)36.
