Table 2 SNPs in gene coding region of P3A.

From: Comparative analysis of chloroplast genomes of kenaf cytoplasmic male sterile line and its maintainer line

Position

Ref_base ↔ P3A_base

Codon mutate

aa mutate

Mutate type

Gene id

Position start

Position end

7,625

A ↔ G

TTA ↔ TTG

L ↔ L

Synonymous

psbK

7,548

7,733

11,938

A ↔ G

ACA ↔ ACG

T ↔ T

Synonymous

atpA

10,861

12,384

18,924

T ↔ C

TGT ↔ TGC

C ↔ C

Synonymous

rpoC2

17,859

22,040

20,202

G ↔ T

CTG ↔ CTT

L ↔ L

Synonymous

rpoC2

17,859

22,040

58,866

A ↔ G

AGT ↔ GGT

S ↔ G

Nonsynonymous

atpB

57,542

59,016

74,374

G ↔ A

AGG ↔ AAG

R ↔ K

Nonsynonymous

rpl20

74,280

74,633

75,742

T ↔ C

GCT ↔ GCC

A ↔ A

Synonymous

clpP

75,703

75,930

84,015

C ↔ T

GGC ↔ GGT

G ↔ G

Synonymous

rpoA

83,997

84,980

119,267

T ↔ G

TTT ↔ TTG

F ↔ L

Nonsynonymous

ycf1

116,250

121,997