Figure 3
From: Comparison of MiSeq, MinION, and hybrid genome sequencing for analysis of Campylobacter jejuni
Alignment of Reference Strain Genome Assemblies. The reference genome, SPAdes assembly, Canu Assembly, and Unicycler Assembly for strains RM1221 (Panel A) and 81-176 (Panel B) were aligned using the ProgressiveMauve alignment tool. The assembly contigs were ordered according to the reference genome. The colored blocks represent homologous regions and the nucleotide identity is represented as a graph within the blocks. Vertical red lines denote contig boundaries. The C. jejuni 81-176 reference contig containing the pVir plasmid sequence is labeled with a double-side arrow.
