Table 3 C. jejuni RM1221 Assemblies.

From: Comparison of MiSeq, MinION, and hybrid genome sequencing for analysis of Campylobacter jejuni

Assembly method

Spades

Canu (50\(\times\))

Unicycler (40\(\times\))

Unicycler (200\(\times\))

Sequence data

MiSeq

MinION

MiSeq + MinION

MiSeq + MinION

Contigs

49

1

1

1

Total length

1,754,554

1,775,387

1,775,616

1,775,624

Largest contig

196,961

1,775,387

1,775,616

1,775,624

Genome coverage

98.61

100

99.759

99.759

Total aligned length

1,754,554

1,775,383

1,773,549

1,773,557

Mismatches per 100 kbp

1.31

44.04

3.66

2.82

Circular contigs

0

1

1

1

  1. Genomes for C. jejuni reference strains RM1221 were assembled using SPAdes, Canu, or Unicycler and compared to the reference genome using QUAST. The MinION data was filtered to an estimated coverage of 40\(\times \), 50\(\times \), or 200\(\times \) using a genome size of 1.7 Mbp.
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