Table 4 C. jejuni 81-176 Assemblies.

From: Comparison of MiSeq, MinION, and hybrid genome sequencing for analysis of Campylobacter jejuni

Assembly method

Spades

Canu (50\(\times\))

Unicycler (40\(\times\))

Unicycler (200\(\times\))

Sequence Data

MiSeq

MinION

MiSeq + MinION

MiSeq + MinION

Contigs

225

3

2

2

Total length

1,674,927

1,698,887

1,654,958

1,655,001

Largest contig

190,065

1,620,169

1,618,421

1,618,464

Genome coverage

98.525

99.984

100

100

Total aligned length

1,593,964

1,621,366

1,618,847

1,618,990

Mismatches per 100kbp

0.94

33.78

5.2

4.7

Circular contigs

0

1 (pVir)

2

2

  1. Genomes for C. jejuni reference strains 81-176 were assembled using SPAdes, Canu, or Unicycler and compared to the reference genome using QUAST. The MinION data was filtered to an estimated coverage of 40\(\times\), 50\(\times\), or 200\(\times\) using a genome size of 1.7 Mbp.
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