Table 9 Core genome MLST.
From: Comparison of MiSeq, MinION, and hybrid genome sequencing for analysis of Campylobacter jejuni
Strain | Assembly | Exact Matches | Mismatches | cgST | % Loci Match |
|---|---|---|---|---|---|
RM1221 | Reference | 1319 | 0 | 1263 | 100.0% |
RM1221 | SPAdes | 1299 | 21 | 1263 | 98.4% |
RM1221 | Unicycler | 1318 | 3 | 1263 | 99.8% |
81-176 | Reference | 1322 | 0 | 22,379 | 100.0% |
81-176 | SPAdes | 1322 | 1 | 22,379 | 99.9% |
81-176 | Unicycler | 1322 | 0 | 22,379 | 100.0% |
R4B202 | SPAdes | 1295 | 85 | 32,998 | 93.7% |
R4B202 | Unicycler | 1305 | 75 | 32,998 | 94.4% |
R4B208 | SPAdes | 1302 | 69 | 26,288 | 94.9% |
R4B208 | Unicycler | 1301 | 69 | 26,288 | 94.9% |
