Table 3 List of significant SNPs, chromosomes, physical location, P values, gene ID, description, and mutation type in 117 accessions of Brassica napus.
Patho-type | SNP | CHR | Position | P value | Gene ID | Description | Mutation type |
|---|---|---|---|---|---|---|---|
5X | A05_101850460 | A05 | 4,869,317 | 2.38E−06 | BnaA05g08830D | Protein NAP1 isoform X1 | upstream gene |
5X | C07_531619426 | C07 | 17,975,139 | 3.01E−06 | BnaC07g12510D | purple acid phosphatase 10 | intergenic gene |
2B | A04_78613030 | A04 | 783,647 | 5.79E−07 | BnaA04g01220D | Phosphotidate cytidylyltransferase 5, chloroplastic | downstream gene |
2B | A01_19406654 | A01 | 19,406,654 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | synonymous |
2B | A01_19406667 | A01 | 19,406,667 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | missense |
2B | A01_19406668 | A01 | 19,406,668 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | missense |
2B | A01_19406672 | A01 | 19,406,672 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | synonymous |
3A | A03_50588774 | A03 | 2,526,981 | 7.63E−08 | BnaA03g05570D | Solute carrier family 25 member 33 | missense |
3A | C03_327139017 | C03 | 3,409,940 | 8.52E−08 | BnaC03g07170D | Galactose oxidase/kelch repeat superfamily protein | synonymous |
3A | A03_50605605 | A03 | 2,543,812 | 3.42E−07 | BnaA03g05600D | Galactose oxidase/kelch repeat superfamily protein | synonymous |
3A | A03_50605321 | A03 | 2,543,528 | 1.15E−06 | BnaA03g05600D | Galactose oxidase/kelch repeat superfamily protein | synonymous |
3D | A01_19406654 | A01 | 19,406,654 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | synonymous |
3D | A01_19406667 | A01 | 19,406,667 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | missense |
3D | A01_19406668 | A01 | 19,406,668 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | missense |
3D | A01_19406672 | A01 | 19,406,672 | 1.33E−06 | BnaA01g27830D | Glutamate decarboxylase 5 | synonymous |
3D | C03_356260031 | C03 | 32,530,954 | 6.83E−07 | BnaC03g47440D | cysteine-rich repeat secretory-like protein (DUF26 and DUF1204) | downstream gene variant |
3D | C09_709659530 | C09 | 1,449,707 | 2.81E−07 | BnaC09g02600D | Small nuclear ribonucleoprotein family protein | downstream gene |
