Table 1 Commonly identified selective signature genes with top 1% of XP-CLR and -2 cutoff for XP-EHH score with log2fold change of < − 1 and FDR of 0.05 against JNP, Duroc and Landrace.
Compare | Chr | Gene symbol | ENS_ID | XP-CLR | XP-EHH | log2FC | FDR |
|---|---|---|---|---|---|---|---|
Nanchukmacdon vs. Jeju Native Pig | 1 | MELK | ENSSSCG00000005344 | 50.31517901 | − 2.312935631 | − 2.18 | 0.000124034 |
11 | SERP2 | ENSSSCG00000040405 | 67.168271 | − 2.485311147 | − 2.15 | 0.008392278 | |
9 | GDPD5 | ENSSSCG00000014853 | 163.2458645 | − 2.364323658 | − 1.63 | 0.00000212 | |
3 | FHL2 | ENSSSCG00000008147 | 78.45288699 | − 2.696124665 | − 1 | 0.000516892 | |
Nanchukmacdon vs. Duroc | 8 | UGT8 | ENSSSCG00000031904 | 44.70694034 | − 2.024535069 | − 3.64 | 0.003195103 |
8 | ZGRF1 | ENSSSCG00000009120 | 56.23853217 | − 2.164609468 | − 1.52 | 0.003773682 | |
15 | NDUFA10 | ENSSSCG00000016349 | 55.03739176 | − 2.714584707 | − 1.24 | 0.00000000000000181 | |
14 | EBF3 | ENSSSCG00000010757 | 86.87865636 | − 2.505302829 | − 1.09 | 0.0000000000063 | |
Nanchukmacdon vs. Landrace | 8 | UGT8 | ENSSSCG00000031904 | 57.77182778 | − 2.738613817 | − 2.34 | 0.000178915 |
3 | ELN | ENSSSCG00000025858 | 85.97446047 | − 2.080438144 | − 1.94 | 0.0000000000000772 | |
4 | NCALD | ENSSSCG00000006059 | 58.25052636 | − 2.861748569 | − 1.05 | 0.0000000314 | |
2 | UBE2L6 | ENSSSCG00000023379 | 80.85200729 | − 2.939038774 | − 1.14 | 0.000000515 |
