Table 2 Annotation of 9 candidate SNP markers to classify the flower color in Platycodon grandiflorus.
ID | Locus* | Region | Variant type | Variant effect | Substitution** | Description |
|---|---|---|---|---|---|---|
T1 | 144:153,991 | PGJG021990 | Missense | Moderate | 1127, G>A | Uncharacterized protein |
T2 | 180:177,095 | PGJG026810 | Synonymous | Low | 1101, T>A | Cell division control protein |
T3 | 1316:87,539 | PGJG150790 | Upstream | Modifier | 211, T>A | Myb-like family |
T4 | 4328:246,345 | PGJG297010 | Downstream | Modifier | 82, G>A | Chorismate synthase 1 |
T5 | 46:86,514 | PGJG007890 | Downstream | Modifier | 3107, T>A | Uncharacterized protein |
T6 | 4733:14,225 | PGJG376590 | Synonymous | Low | 1989, G>A | Trafficking protein |
T7 | 765:76,395 | PGJG097920 | Synonymous | Low | 852, A>G | Myb-like family |
T8 | 765:78,413 | PGJG097920 | Missense | Moderate | 95, A>T | Myb-like family |
T9 | 1078:54,988 | PGJG129730 | Synonymous | Low | 1539, C>T | Glycosyl hydrolase family |
