Table 2 Selected oligonucleotide sequence candidates. Twenty-five most frequent oligonucleotide sequences obtained after next-generation sequencing (NGS) of the 8th Cell-Selex cycle. Only the sequence corresponding to the random region is shown. Primer binding sites were neglected in this representation.
From: Selection of aptamers against triple negative breast cancer cells using high throughput sequencing
Aptamer ID | Sequences (5′–3′) | Copies |
|---|---|---|
Apt1 | ‘GCATCCACCGTGAATATTGTAACGCTATATGTGAGTGGCTAAGTGCACC' | 89 |
Apt2 | ‘ATGTTGTTGCCGGGACGCCTCCTTCACCAAAGTTGGTGTCCCCACCTAC' | 86 |
Apt3 | ‘TCGGGTGATGGGTGGACAAAAGTTAGTAGCCGCGAGCCACTGGCCCAGT' | 79 |
Apt4 | ‘AATGAGTGTCATCCGACTAAGATCTATTTTAAGCTCGACTCGTTTGGCA' | 64 |
Apt5 | ‘CGCGGTGTTATGAGGGGACAAGTACAAATCAATGTCGCCGCGTAGCCGC' | 59 |
Apt6 | ‘ATGCAAGTGTTGCCGCGCAAACAATGCCTCCTGCTTATTTGTGCCACCA' | 59 |
Apt7 | ‘AGGGAGGTAGCGTGCCCACCAGGAGTTTTGCGCTATACGATGTTGCTGG' | 58 |
Apt8 | GATGACTGGTCATACGCGCGATAAGTATATGCTGCCACCGGAGTTGCCG' | 56 |
Apt9 | ‘GACGATGTGGTCCGCTGGAATTTTGCGAGCCCGCTATATGAAATCGCCA' | 56 |
Apt10 | ‘CGCCAAGGTCCGGAAGCGGAGTTAGTAGCCGCGAAATCACTGGCCCTCA' | 49 |
Apt11 | ‘ATGCCATACGAAGTTGCCGCGTATTCTTTGCTAACGCCACCGGAGTATG' | 49 |
Apt12 | ‘CTGACGATCCGGGCCAAGATAATCTCTGCGATCAGTCGCCAGTCTTTCG' | 38 |
Apt13 | ‘GATTAGTACGCGCATGTTGTCGTTTTTCGGAACCACCAGTAGCGTTCGC' | 37 |
Apt14 | ‘CGAAGTTTGTAGCCGCGGAACTACTGGCACGTCATTGCGTATCAGGTTG' | 36 |
Apt15 | ‘TGGCCATCGGTCTTGTTGCCGAGACCCAGCTCTCCACCATTCCGATCGC' | 35 |
Apt16 | ‘CGAGTCGTGGGATCTCCACAATCCGCCGAATTAGTTGCGCCACACCACA' | 34 |
Apt17 | ‘TAGAGCCACTGAACCTTACCTGGCCCTGCAGAAGGTGAATTGCCGCGTA' | 31 |
Apt18 | ‘CGCAGGGTGTAGCCGCGATCCACTGGGTTCTTCCGTTGTACGTTGACGG' | 29 |
Apt19 | ‘AATTGGACAGTATTAGCCAGTCGCCATGAACTCTTGAGTACCATCGCCG' | 29 |
Apt20 | ‘GACATTACCCATCTAGACGGGGGTTATTCTTAGTAGCCGCGAAACCGTG' | 29 |
Apt21 | ‘CGCCGGTATAATTCGAAACATGAGTATTAGTAAGTCGAGGAGCGGCCGC' | 28 |
Apt22 | ‘GCCGTCCGTTCCCGCAAGGGTATCCACGTTCTTAGTTTGTAGCTGCGAG' | 28 |
Apt23 | ‘TCCGCATGGTTCAGATATGTTGCCGCCACGAAATGGCCACCAATGACCT' | 28 |
Apt24 | ‘ACAGACGTGTTTGTAGCCGCGAAACTACTGGCAACTTACCCAAATCTCG' | 25 |
Apt25 | ‘GAGCAGTCGCCACCGTATCTATTACGAGACTATAGAACGTTGCCGCGAC' | 25 |