Table 1 Summary of the DGE sequencing tags and their matches in the G. hirsutum genome.
Sample | Raw reads (M) | Clean reads (M) | GC content | ≥ Q30 | Mapped reads (M) | Unique mapped reads (M) | Multi mapped reads (M) |
|---|---|---|---|---|---|---|---|
CK_L1 | 42.2 | 40.5 | 44% | 97.24% | 95.66% | 67.57% | 28.09% |
CK_L2 | 39.3 | 37.7 | 44.5% | 97.2% | 95.33% | 67.42% | 27.90% |
CK_L3 | 38.1 | 37.1 | 45% | 96.87% | 94.36% | 66.19% | 28.18% |
CK_R1 | 50.8 | 49.6 | 43% | 97.13% | 94.02% | 67.61% | 26.41% |
CK_R2 | 35.8 | 34.6 | 43% | 97.14% | 93.78% | 68.15% | 25.64% |
CK_R3 | 46.7 | 45.4 | 43% | 97.23% | 95.16% | 69.63% | 25.53% |
CK_S1 | 39.1 | 37.6 | 43% | 97.43% | 94.70% | 69.23% | 25.48% |
CK_S2 | 34.7 | 33.5 | 43% | 97.02% | 93.69% | 68.39% | 25.29% |
CK_S3 | 42.4 | 40.7 | 43% | 97.18% | 93.93% | 68.30% | 25.63% |
SS_L1 | 41.2 | 40.1 | 44% | 97.19% | 95.88% | 69.68% | 26.20% |
SS_L2 | 42.3 | 41.1 | 43.5% | 96.83% | 95.48% | 69.22% | 26.26% |
SS_L3 | 41.9 | 40.9 | 44% | 97.42% | 95.88% | 69.26% | 26.62% |
SS_R1 | 40.4 | 39.3 | 44% | 97.08% | 90.85% | 67.10% | 23.75% |
SS_R2 | 42.9 | 41.4 | 44.5% | 97.4% | 87.03% | 63.46% | 23.58% |
SS_R3 | 49.9 | 47.7 | 44% | 97.48% | 90.92% | 66.12% | 24.80% |
SS_S1 | 55.4 | 54.0 | 43% | 96.99% | 93.27% | 67.66% | 25.61% |
SS_S2 | 44.1 | 43.2 | 43% | 97.16% | 95.73% | 70.01% | 25.72% |
SS_S3 | 38.4 | 37.6 | 43% | 97.06% | 95.24% | 70.27% | 24.98% |
