Figure 2

Map of the raw reads on the de novo assembled AnRB3214 genome. The figure shows the coverage and depth of arenavirus reads retrieved with different tools on the small (S) and large (L) segments of strain AnRB3214. Minimap2 and Kaiju afforded the most extensive coverage of both segments with a depth of more than × 1000. Blastn, Centrifuge and Kraken 2 map the reads only at certain genomic regions with low coverage of other portion of the genome.