Table 1 Percentages of reads identified as an arenavirus using different classification tools. The highest number of reads classified as belonging to arenaviruses were obtained with Kaiju tool for both MinION and Illumina libraries.

From: Molecular characterization of a new highly divergent Mobala related arenavirus isolated from Praomys sp. rodents

 

Number of reads

Kraken2 (%)

Kaiju (%)

Centrifuge (%)

MinIon

50,010

0.12

0.88

0.01

Dilution 10%

5001

0.16

1.04

0.03

Dilution 1%

500

0.26

1.04

0

Dilution 0.10%

50

0

0

0

Illumina

9,275,654

0.07

0.45

0.02

Dilution 10%

927,565

0.07

0.46

0.02

Dilution 1%

92,756

0.07

0.45

0.02

Dilution 0.10%

9276

0.05

0

0.02

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