Table 2 Similarities of strain AnRB3214 with other Old-World arenaviruses at the nucleic acid (NA) and amino acid (AA) level and accession number.
Virus | Accession No. | Date of isolation | Host | Country | Small (S) segment | Large (L) segment | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Similarity (%) | GPC | NP | Similarity (%) | Z | RdRp | ||||||||||
S segment | L segment | NA (%) | AA (%) | NA (%) | AA (%) | NA (%) | AA (%) | NA (%) | AA (%) | ||||||
Mobala | AY342390.1 | NC_007904.1 | 1980 | Praomys sp. | CAR | 79 | 83 | 94 | 74 | 83 | 78 | 82 | 83 | 80 | 87 |
Gairo | NC_026246.1 | NC_026247.1 | 2012 | M. natalensis | Tanzania | 72 | 74 | 83 | 68 | 77 | 68 | 76 | 66 | 69 | 73 |
Luna | AB693148.1 | AB693149.1 | 2010 | M. natalensis | Zambia | 70 | 73 | 83 | 65 | 69 | 62 | 76 | 68 | 64 | 65 |
Morogoro | NC_013057.1 | NC_013058.1 | 2004 | M. natalensis | Tanzania | 68 | 71 | 82 | 66 | 70 | 61 | 72 | 63 | 63 | 63 |
Mopeia | DQ328874.1 | DQ328875.1 | 1977 | M. natalensis | Mozambique | 68 | 71 | 82 | 65 | 70 | 61 | 75 | 64 | 63 | 64 |
Gbagroube | GU830848.1 | nd | 2005 | M. setulosus | Ivory Coast | 66 | 68 | 80 | 63 | 66 | nd | nd | nd | nd | nd |
Lassa | KM821904.1 | KM821905.1 | 2013 | H. sapiens | Sierra Leone | 65 | 68 | 75 | 63 | 67 | 58 | 70 | 65 | 60 | 60 |
Wenzhou | KM386660.1 | KM386661.1 | 2014 | R. norvegecus | China | 64 | 63 | 73 | 62 | 64 | 56 | 64 | 59 | 58 | 55 |
Ippy | DQ328877.1 | DQ328878.1 | 1970 | Arvicanthis sp. | CAR | 64 | 66 | 75 | 61 | 65 | 56 | 66 | 65 | 58 | 56 |
Mariental | NC_027134.1 | KP867641.1 | 2012 | M. namaquensis | Namibia | 63 | 66 | 77 | 60 | 64 | 52 | 63 | 64 | 53 | 49 |
Menekre | GU830862.1 | nd | 2005 | Hylomyscus sp. | Ivory Coast | 63 | 66 | 77 | 61 | 64 | nd | nd | nd | nd | nd |
Okahandja | NC_027135.1 | NC_027137.1 | 2012 | M. namaquensis | Namibia | 62 | 63 | 69 | 59 | 61 | 56 | 69 | 57 | 56 | 53 |
Loie River | KC669698.1 | KC669693.1 | 2008 | Bandicota sp. | Thailand | 63 | 64 | 73 | 56 | 59 | 56 | 67 | 64 | 58 | 55 |
Merino Walk | NC_023764.1 | NC_023763.1 | 1985 | M. unisulcatus | South Africa | 61 | 63 | 71 | 59 | 60 | 57 | 65 | 55 | 59 | 55 |
LCMV | KJ603308.1 | KJ603307.1 | 2014 | M. musculus | USA | 60 | 59 | 62 | 58 | 58 | 51 | 62 | 52 | 54 | 48 |
Lunk | NC_018710.1 | NC_018711.1 | 2010 | M minutoides | Zambia | 57 | 58 | 61 | 57 | 57 | 50 | 64 | 53 | 50 | 45 |
Dandenong | EU136038.1 | EU 136039.1 | 2008 | H. sapiens | Australia | 58 | 59 | 63 | 57 | 57 | 50 | 62 | 56 | 53 | 48 |
Lujo | NC_012776.1 | NC_012777.1 | 2008 | H. sapiens | Zambia | 53 | 49 | 48 | 55 | 51 | 47 | 62 | 47 | 50 | 45 |
Souris | NC_039012.1 | KP050226.1 | 2013 | Praomys sp. | Cameroon | 37 | 14 | 33 | 14 | 55 | 58 | 55 | 52 | ||
