Table 2 Summary of different technologies for molecular identification of fish genetic sex.

From: A simple and rapid method for fish sex identification based on recombinase-aided amplification and its use in Cynoglossus semilaevis

Method

Timea

Estimated costb

Required operational skills

Instruments required

Advantages

Disadvantages

PCR + electrophoresis

 ~ 4–6 h

$ 0.05 ~ 0.1

Regular molecular biology skills

Regular thermal cycler

Gel imaging system

Low cost

Need to be performed in a regular molecular biology lab

Time consuming

PCR + Sanger sequencing

 ~ 1 day

$ 3 ~ 8

Regular molecular biology skills

Specialized skill for operating Sanger sequencer

Sanger sequencer, or Genetic Analyzer

Accuracy

High cost per sample

Need to be performed in a molecular biology lab with an expensive Sanger sequencerc

Time consuming

RAA-CE

 ~ 30 min

$ 6.2d

Regular molecular biology skills

Specialized skill for operating capillary electrophoresis

Dry bath with 96-well block

Time saving

High cost per sample

Need to be performed in a molecular biology lab with an expensive CE

RAA-LFD

 ~ 30 min

$ 6.2d

Regular molecular biology skills

Dry bath with 96-well block

Time saving

Convenience

Potentially versatile testing scenarios

High cost per sample

  1. aEstimated turnaround time of the sex identification methods. The time for reaction preparation, reaction and result visualization included, while the time for nucleotide extraction not included;
  2. bCost per reaction was estimated based on the prices of consumables and reagents in Anhui Province, China. Cost may vary depending on the sources of consumables and/or reagents;
  3. cOutsourced Sanger sequencing usually lead to longer turnaround time (2–5 days);
  4. dRAA-CE cost breakdown: the cost for RAA kit is $3.7 per sample; the cost for CE is $1.8 per sample; the cost for regular PCR reagent is $0.1 per sample; the cost for a set of labeled primer/probe is ~ $0.6 per sample. RAA-LFD cost breakdown: the cost for RAA kit is $3.7 per sample; the cost for LFD is $1.8 per sample; the cost for regular PCR reagent is $0.1 per sample; the cost for a set of labeled primer/probe is ~ $0.6 per sample.