Table 4 Functional annotation of predicted genes according to the COGs.

From: Chryseobacterium schmidteae sp. nov. a novel bacterial species isolated from planarian Schmidtea mediterranea

Code

Value

Description

Information storage and processing

[J]

154

Translation, ribosomal structure and biogenesis

[A]

0

RNA processing and modification

[K]

170

Transcription

[L]

163

Replication, recombination and repair

[B]

0

Chromatin structure and dynamics

Cellular processes and signaling

[D]

20

Cell cycle control, cell division, chromosome partitioning

[Y]

0

Nuclear structure

[V]

77

Defense mechanisms

[T]

116

Signal transduction mechanisms

[M]

222

Cell wall/membrane/envelope biogenesis

[N]

6

Cell motility

[Z]

0

Cytoskeleton

[W]

0

Extracellular structures

[U]

23

Intracellular trafficking, secretion, and vesicular transport

[O]

105

Posttranslational modification, protein turnover, chaperones

[X]

0

Mobilome: prophages, transposons

Metabolism

[C]

119

Energy production and conversion

[G]

114

Carbohydrate transport and metabolism

[E]

173

Amino acid transport and metabolism

[F]

55

Nucleotide transport and metabolism

[H]

91

Coenzyme transport and metabolism

[I]

101

Lipid transport and metabolism

[P]

136

Inorganic ion transport and metabolism

[Q]

39

Secondary metabolites biosynthesis, transport and catabolism

Poorly characterized

[R]

342

General function prediction only

[S]

237

Function unknown

  1. Functional annotation of Marseille-P9602 predicted genes according to the COGs database.