Table 1 Sequences of siRNA, shRNA, and gRNAs targeting HML-2 expression.

From: SMARCB1 deletion in atypical teratoid rhabdoid tumors results in human endogenous retrovirus K (HML-2) expression

Reagent

Nucleotide sequence

Alignment to consensus gene or consensus LTR5_Hs

siRNA ENV 1

CUGACGCAGUUAGCUACAAUU

166–184

siRNA ENV 2

GAUUCACUUAUCACAUGGUUU

572–590

gRNA sequence 1

GATAGGGAAAAACCGCCTTAAGGG

563–585

gRNA sequence 2

AAAGCAGTATTGCTGCCCGCAGG

600–620

gRNA sequence 3

TCCTGCCTGTCCCTGGGCAATGG

538–560

gRNA sequence 4

AGTAGATGGAGCATACAATCGGG

498–520

shRNA_469

GGGTATCGTTATCCTCCTATT

469–489

shRNA_866

CAGCTGTTGATAGCGACTTAA

866–886

shRNA_1620

CATGAGCTTAGAACATCGTTT

1620–1640