Table 1 Summary of identifying pathway regulators using triple-gene mutual interaction (TGMI) and sparse partial least squares (SPLS) in the top 50 transcription factors that have the highest connectivity to pathway genes.
Species | Tissues | Pathway | Number of positive TFs | Runtime TGMI/SPLS | ||
|---|---|---|---|---|---|---|
TGMI | SPLS | In common | ||||
Arabidopsis | Stem | Flavanone, flavonol, anthocyannin | 12 | 4 | 1 | 2.24/16.3 h |
Arabidopsis | Stem | Lignin | 23 | 20 | 13 | 0.64/20.09 h |
Populus | Xylem | Lignin | 22 | 7 | 7 | 0.85/7.14 h |
Arabidopsis | Leaf | Photosynthesis (Light reaction + Calvin cycle) | 16 | 8 | 4 | 12.91/70.24 h |
Arabidopsis | Leaf | Light reaction | 14 | 7 | 6 | –/– |
