Table 2 List of descriptors in the sequence-based feature set.
From: The structure-based cancer-related single amino acid variation prediction
# | Feature name | # | Feature name |
|---|---|---|---|
1 | Substitution index: BLOSUM62 | 23 | AAC: H-hydrophobic (CVLIMFW) |
2 | Substitution index: PAM250 | 24 | AAC: V-small (GASCTPD) |
3 | Substitution index: PSSM | 25 | AAC: V-medium (NVEQIL) |
4 | Entropy: 7th residue before SAV | 26 | AAC: V-large (MHKFRYW) |
5 | Entropy: 6th residue before SAV | 27 | AAC: Z-low polarizability (GASDT) |
6 | Entropy: 5th residue before SAV | 28 | AAC: Z-neutral (PATGS) |
7 | Entropy: 4th residue before SAV | 29 | AAC: Z-high polarizability (KMHFRYW) |
8 | Entropy: 3rd residue before SAV | 30 | AAC: P-low polarity (LIFWCMVY) |
9 | Entropy: 2nd residue before SAV | 31 | AAC: P-neutral polarity (PATGS) |
10 | Entropy: 1st residue before SAV | 32 | AAC: P-high polarity (HQRKNED) |
11 | Entropy: SAV | 33 | AAC: F-acidic (DE) |
12 | Entropy: 1st residue after SAV | 34 | AAC: F-basic (HKR) |
13 | Entropy: 2nd residue after SAV | 35 | AAC: F-polar (CGNQSTY) |
14 | Entropy: 3rd residue after SAV | 36 | AAC: F-nonpolar (AFILMPVW) |
15 | Entropy: 4th residue after SAV | 37 | AAC: E-acidic (DE) |
16 | Entropy: 5th residue after SAV | 38 | AAC: E-basic (HKR) |
17 | Entropy: 6th residue after SAV | 39 | AAC: E-aromatic (FWY) |
18 | Entropy: 7th residue after SAV | 40 | AAC: E-amide (NQ) |
19 | Entropy: Average of 15 residues | 41 | AAC: E-small hydroxyl (ST) |
20 | Entropy: Average of 5 residues | 42 | AAC: E-sulfur-containing (CM) |
21 | AAC: H-polar (RKEDQN) | 43 | AAC: E-aliphatic 1 (AGP) |
22 | AAC: H-neutral (GASTPHY) | 44 | AAC: E-aliphatic 2 (ILV) |
