Table 4 List of descriptors in the microenvironment-based feature set.
From: The structure-based cancer-related single amino acid variation prediction
# | Feature name | # | Feature name |
|---|---|---|---|
1 | WCN: \(C_{\alpha }\) atoms in SAV chain | 17 | WCN: Z-high polarizability (KMHFRYW) |
2 | WCN: Nitrogen atoms in SAV chain | 18 | WCN: P-low polarity (LIFWCMVY) |
3 | WCN: Oxygen atoms in SAV chain | 19 | WCN: P-neutral polarity (PATGS) |
4 | WCN: \(C_{\alpha }\) atoms in whole protein | 20 | WCN: P-high polarity (HQRKNED) |
5 | WCN: Nitrogen in whole protein | 21 | WCN: F-acidic (DE) |
6 | WCN: Oxygens in whole protein | 22 | WCN: F-basic (HKR) |
7 | WCN: \(C_{\alpha }\) atoms in other chains | 23 | WCN: F-polar (CGNQSTY) |
8 | WCN: Atoms in other molecules | 24 | WCN: F-nonpolar (AFILMPVW) |
9 | WCN: H-polar (RKEDQN) | 25 | WCN: E-acidic (DE) |
10 | WCN: H-neutral (GASTPHY) | 26 | WCN: E-basic (HKR) |
11 | WCN: H-hydrophobic (CVLIMFW) | 27 | WCN: E-aromatic (FWY) |
12 | WCN: V-small (GASCTPD) | 28 | WCN: E-amide (NQ) |
13 | WCN: V-medium (NVEQIL) | 29 | WCN: E-small hydroxyl (ST) |
14 | WCN: V-large (MHKFRYW) | 30 | WCN: E-sulfur-containing (CM) |
15 | WCN: Z-low polarizability (GASDT) | 31 | WCN: E-aliphatic 1 (AGP) |
16 | WCN: Z-neutral (PATGS) | 32 | WCN: E-aliphatic 2 (ILV) |
