Table 6 The five-fold cross-validation performance values in the training set of the CanSavPrewm system for each wild-type (WT) residue and the total (bolded).

From: The structure-based cancer-related single amino acid variation prediction

WT

TP

TN

FP

FN

Accuracy

Sensitivity

Specificity

MCC

Precision

F1 score

ALA

119

616

41

68

0.8709

0.6364

0.9376

0.6081

0.7438

0.6859

CYS

43

93

4

2

0.9577

0.9556

0.9588

0.9040

0.9149

0.9348

ASP

160

375

37

56

0.8519

0.7407

0.9102

0.6664

0.8122

0.7748

GLU

212

341

67

42

0.8353

0.8346

0.8358

0.6602

0.7599

0.7955

PHE

67

118

9

18

0.8726

0.7882

0.9291

0.7331

0.8816

0.8323

GLY

192

406

31

44

0.8886

0.8136

0.9291

0.7528

0.8610

0.8366

HIS

69

182

6

8

0.9472

0.8961

0.9681

0.8710

0.9200

0.9079

ILE

97

428

9

19

0.9494

0.8362

0.9794

0.8436

0.9151

0.8739

LYS

80

258

5

18

0.9363

0.8163

0.9810

0.8357

0.9412

0.8743

LEU

154

292

29

24

0.8938

0.8652

0.9097

0.7702

0.8415

0.8532

MET

55

199

3

8

0.9585

0.8730

0.9851

0.8835

0.9483

0.9091

ASN

78

333

7

12

0.9558

0.8667

0.9794

0.8643

0.9176

0.8914

PRO

150

324

39

50

0.8419

0.7500

0.8926

0.6512

0.7937

0.7712

GLN

68

200

12

15

0.9085

0.8193

0.9434

0.7714

0.8500

0.8344

ARG

216

1,189

59

112

0.8915

0.6585

0.9527

0.6538

0.7855

0.7164

SER

202

376

56

15

0.8906

0.9309

0.8704

0.7724

0.7829

0.8505

THR

118

490

15

32

0.9282

0.7867

0.9703

0.7907

0.8872

0.8339

VAL

97

681

14

59

0.9142

0.6218

0.9799

0.6912

0.8739

0.7266

TRP

23

41

1

1

0.9697

0.9583

0.9762

0.9345

0.9583

0.9583

TYR

47

169

7

17

0.9000

0.7344

0.9602

0.7356

0.8704

0.7966

TOTAL

2,247

7,111

451

620

0.8973

0.7837

0.9404

0.7382

0.8328

0.8075