Table 1 Twenty-four pairs of association signals for different rice biomass traits with strong LD.
Signal_A | Signal_B | R2 | ||||
|---|---|---|---|---|---|---|
Position | Trait | Known gene around signal_A | Position | Trait | Known gene around signal_B | |
Chr1_22317253 | Root thickness | – | Chr1_23104043 | Ratio of root to shoot | – | 0.37 |
Chr1_24783550 | Shoot length | OsWRKY11 | Chr1_24803735 | Shoot weight | OsWRKY11 | 0.27 |
Chr2_2181734 | Shoot length | – | Chr2_2190465 | Shoot weight | – | 0.90 |
Chr2_7382634 | Ratio of root to shoot | – | Chr2_7969845 | Root weight | – | 0.48 |
Chr2_7969845 | Root weight | – | Chr2_8392444 | Ratio of root to shoot | – | 0.52 |
Chr3_17596162 | Root thickness | – | Chr3_18010651 | Root weight | – | 0.23 |
Chr6_1090424 | Shoot weight | – | Chr6_1118367 | Shoot length | – | 0.48 |
Chr6_21574106 | Shoot length | – | Chr6_21687213 | Root weight | – | 0.41 |
Chr6_21687213 | Root weight | – | Chr6_21936682 | Shoot length | d35 | 0.28 |
Chr6_30045542 | Root weight | OsPTR9 | Chr6_30047965 | Ratio of root to shoot | OsPTR9 | 0.86 |
Chr6_30045542 | Root weight | OsPTR9 | Chr6_30077572 | Root length | OsPTR9 | 0.63 |
Chr6_30047965 | Ratio of root to shoot | OsPTR9 | Chr6_30077572 | Root length | OsPTR9 | 0.57 |
Chr7_6836133 | Root thickness | – | Chr7_6849331 | Root weight | – | 0.82 |
Chr7_18407253 | Shoot length | CHR729 | Chr7_19348504 | Shoot weight | – | 0.37 |
Chr8_6201957 | Root length | – | Chr8_6966865 | Root weight | – | 0.29 |
Chr10_13106609 | Root length | – | Chr10_13212543 | Ratio of root to shoot | – | 0.27 |
Chr10_16372108 | Root thickness | – | Chr10_16449959 | Root weight | – | 0.49 |
Chr10_19886882 | Root weight | OsNIP3 | Chr10_20880089 | Ratio of root to shoot | – | 0.38 |
Chr10_20880089 | Ratio of root to shoot | – | Chr10_21256365 | Shoot weight | – | 0.31 |
Chr12_17215000 | Root length | – | Chr12_17311797 | Root weight | – | 0.52 |
Chr12_17845083 | Root weight | – | Chr12_17848236 | Shoot weight | – | 0.72 |
Chr12_17845083 | Root weight | – | Chr12_17869886 | Root length | – | 0.70 |
Chr12_17848236 | Shoot weight | – | Chr12_17869886 | Root length | – | 0.57 |
Chr12_20594911 | Shoot length | – | Chr12_20854338 | Root weight | – | 0.31 |
