Table 2 Shortlisted candidate genes from the constructed PPI network for the trait parthenocarpy.
Accession ID (Version I) | Gene Name | Gene description retrieved using BLAST2GO59 | Expression of gene in other seedless traits** | Expression in Musa spp. | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
C4 | CVR | PL | ||||||||||
UnP | P24 | P48 | UnP | P24 | P48 | UnP | P24 | P48 | ||||
GSMUA_Achr7P18880_001 | MaZEP | Zeaxanthin epoxidase | Down regulation | * | * | * | * | * | * | * | * | * |
GSMUA_Achr6P16390_001 | MaLFY | LFY-like protein OrcLFY | Down regulation | ++ | -- | ---- | - | ---- | -- | -- | - | -- |
GSMUA_Achr3P23580_001 | MaMADS29 | MADS-box protein AeAP3-2 isoform X1 | Down regulation | -- | ++ ++ | ++ | -- | ++ + | --- | ++ | +++ | + |
GSMUA_Achr3P22920_001 | MaHK2 | probable histidine kinase 2 | Down regulation | ++ | + | + | + | --- | --- | --- | ---- | ---- |
GSMUA_Achr9P20950_001 | MaMADS16 | MADS-box transcription factor 16-like | Down regulation | ++ | ++ | -- | -- | ++ | ++ | - | ---- | -- |
GSMUA_Achr4P07370_001 | MaBAM1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | Down regulation | ++ | -- | -- | ++ | – | -- | -- | ---- | --- |
GSMUA_Achr4P07220_001 | MaGH3.8 | probable indole-3-acetic acid-amidosynthetase GH3.8 | Down regulation | ++++ | ++ | ++ | + | --- | ++ | + | --- | ++ |
GSMUA_Achr11P05030_001 | MaACLB-2 | ATP Citrate synthase beta chain | Up regulation | – | ++ | ++ ++ | - | ++ + | +++ | - | ---- | -- |
GSMUA_Achr3P02280_001 | MaAGL8 | Agamous like MADS TF | Down regulation | ++ | ++ | – | ++ | ++ + | ++++ | ++ | ---- | ++ |
GSMUA_Achr1P21300_001 | MaRGA1 | DELLA | Down regulation | +++ | ++ | + | ++ | + | ---- | + | --- | + |
GSMUA_Achr8P05910_001 | MaGID1C | Gibberellin 1C receptor like | Up regulation | +++ | ++ | - | ++ + | – | - | ++++ | +++ | ++ |
GSMUA_Achr1P02650_001 | MaEXPA1 | expansin-A11-like | Up regulation | +++ | -- | ++ | + | --- | ---- | + | +++ | + |
