Table 3 Carbohydrate and lipid metabolism pathways as predicted in emao by MAPLE system.
From: Community structure and metabolic potentials of the traditional rice beer starter ‘emao’
Sl. No | Module ID | Pathway name | MCR % (ITR) | MCR % (WC) | Q-value (WC) |
|---|---|---|---|---|---|
Central carbohydrate metabolism | |||||
1 | M00001 | Glycolysis (Embden-Meyerhof pathway), glucose = > pyruvate | 100 | 100 | 0 |
2 | M00002 | Glycolysis, core module involving three-carbon compounds | 100 | 100 | 0 |
3 | M00003 | Gluconeogenesis, oxaloacetate = > fructose-6P | 100 | 100 | 0 |
4 | M00307 | Pyruvate oxidation, pyruvate = > acetyl-CoA | 100 | 100 | 0 |
5 | M00009 | Citrate cycle (TCA cycle, Krebs cycle) | 87.5 | 87.5 | 0 |
6 | M00010 | Citrate cycle, first carbon oxidation, oxaloacetate = > 2-oxoglutarate | 100 | 100 | 0 |
7 | M00011 | Citrate cycle, second carbon oxidation, 2-oxoglutarate = > oxaloacetate | 80 | 80 | 0 |
8 | M00004 | Pentose phosphate pathway (Pentose phosphate cycle) | 100 | 100 | 0 |
9 | M00006 | Pentose phosphate pathway, oxidative phase, glucose 6P = > ribulose 5P | 100 | 100 | 0 |
10 | M00007 | Pentose phosphate pathway, non-oxidative phase, fructose 6P = > ribose 5P | 100 | 100 | 0 |
11 | M00580 | Pentose phosphate pathway, archaea, fructose 6P = > ribose 5P | 100 | 100 | 0 |
12 | M00005 | PRPP biosynthesis, ribose 5P = > PRPP | 100 | 100 | 0 |
13 | M00008 | Entner-Doudoroff pathway, glucose-6P = > glyceraldehyde-3P + pyruvate | 75 | 75 | 0.5 |
14 | M00308 | Semi-phosphorylative Entner-Doudoroff pathway, gluconate = > glycerate-3P | 80 | 80 | 0.875 |
Other carbohydrate metabolism | |||||
15 | M00012 | Glyoxylate cycle | 100 | 100 | 0 |
16 | M00013 | Malonate semialdehyde pathway, propanoyl-CoA = > acetyl-CoA | 100 | 100 | 0 |
17 | M00632 | Galactose degradation, Leloir pathway, galactose = > alpha-D-glucose-1P | 100 | 100 | 0 |
18 | M00014 | Glucuronate pathway (uronate pathway) | 62.5 | 75 | 0.751 |
19 | M00630 | D-Galacturonate degradation (fungi), D-galacturonate = > glycerol | 75 | 75 | 0.276 |
20 | M00631 | D-Galacturonate degradation (bacteria), D-galacturonate = > pyruvate + D-glyceraldehyde 3P | 60 | 80 | 0.376 |
21 | M00061 | D-Glucuronate degradation, D-glucuronate = > pyruvate + D-glyceraldehyde 3P | 100 | 100 | 0 |
22 | M00081 | Pectin degradation | 100 | 100 | 0 |
23 | M00549 | Nucleotide sugar biosynthesis, glucose = > UDP-glucose | 100 | 100 | 0 |
24 | M00554 | Nucleotide sugar biosynthesis, galactose = > UDP-galactose | 100 | 100 | 0 |
25 | M00793 | dTDP-L-rhamnose biosynthesis | 100 | 100 | 0 |
Fatty acid metabolism | |||||
26 | M00082 | Fatty acid biosynthesis, initiation | 100 | 100 | 0 |
27 | M00083 | Fatty acid biosynthesis, elongation | 100 | 100 | 0 |
28 | M00085 | Fatty acid biosynthesis, elongation, mitochondria | 100 | 100 | 0 |
29 | M00415 | Fatty acid biosynthesis, elongation, endoplasmic reticulum | 100 | 100 | 0 |
30 | M00086 | beta-Oxidation, acyl-CoA synthesis | 100 | 100 | 0 |
31 | M00087 | beta-Oxidation | 100 | 100 | 0 |
Lipid metabolism | |||||
32 | M00089 | Triacylglycerol biosynthesis | 75 | 75 | 0.956 |
33 | M00098 | Acylglycerol degradation | 100 | 100 | 0 |
34 | M00090 | Phosphatidylcholine (PC) biosynthesis, choline = > PC | 100 | 100 | 0 |
35 | M00091 | Phosphatidylcholine (PC) biosynthesis, PE = > PC | 100 | 100 | 0 |
36 | M00092 | Phosphatidylethanolamine (PE) biosynthesis, ethanolamine = > PE | 100 | 100 | 0 |
37 | M00093 | Phosphatidylethanolamine (PE) biosynthesis, PA = > PS = > PE | 100 | 100 | 0 |
38 | M00130 | Inositol phosphate metabolism, PI = > PIP2 = > Ins (1,4,5) P3 = > Ins (1,3,4,5) P4 | 75 | 75 | 0.739 |
39 | M00094 | Ceramide biosynthesis | 100 | 100 | 0 |
40 | M00099 | Sphingosine biosynthesis | 100 | 100 | 0 |
41 | M00100 | Sphingosine degradation | 100 | 100 | 0 |
Glycan metabolism | |||||
42 | M00055 | N-glycan precursor biosynthesis | 100 | 100 | 0 |
43 | M00072 | N-glycosylation by oligosaccharyltransferase | 100 | 100 | 0 |
44 | M00073 | N-glycan precursor trimming | 100 | 100 | 0 |
45 | M00074 | N-glycan biosynthesis, high-mannose type | 100 | 100 | 0 |
46 | M00065 | GPI-anchor biosynthesis, core oligosaccharide | 100 | 100 | 0 |
Sub-category: terpenoid backbone biosynthesis | |||||
47 | M00095 | C5 isoprenoid biosynthesis, mevalonate pathway | 100 | 100 | 0 |
48 | M00849 | C5 isoprenoid biosynthesis, mevalonate pathway, archaea | 100 | 100 | 0 |
49 | M00364 | C10-C20 isoprenoid biosynthesis, bacteria | 100 | 100 | 0 |
50 | M00366 | C10-C20 isoprenoid biosynthesis, plants | 50 | 100 | 0 |
51 | M00367 | C10-C20 isoprenoid biosynthesis, non-plant eukaryotes | 100 | 100 | 0 |
Sterol biosynthesis | |||||
52 | M00101 | Cholesterol biosynthesis, squalene 2,3-epoxide = > cholesterol | 80 | 80 | 0.751 |
53 | M00102 | Ergocalciferol biosynthesis | 100 | 100 | 0 |
54 | M00109 | C21-Steroid hormone biosynthesis, progesterone = > cortisol/cortisone | 50 | 75 | 0.574 |
