Table 1 Protein quantification in 4 cell lines. Summary of the number of quantified proteins from biological triplicate analysis of each cell line in cellular proteome or secretome.

Cell lines

Quantified proteins (gene centric, 1% FDR)

# of cell-type enriched proteins (gene centric, ≥ 2FC, 1% FDR)

Peptides (unique, 1% FDR)

Peptides/protein (unique, median)

Sequence coverage (%)/protein (unique, mean)

Total quantified proteins (gene centric, 1% FDR)