Table 2 Numerical values reporting on the association rate constant, kon, and the dissociation rate constant, koff, quantifying the interaction between different oligonucleotides and BsCspB obtained under dilute conditions and in crowded environments determined by kinetic stopped-flow fluorescence spectroscopy.
From: Impact of crowded environments on binding between protein and single-stranded DNA
Ligand | Condition | kon (107/s/M) | koff (/s) | koffeq (/s) |
|---|---|---|---|---|
dT5 | Dilute | 34 ± 1 | 100 ± 10 | 260 |
dT6 | Dilute | 32 ± 1 | n.d | 18 |
dT7 | Dilute | 35 ± 4 | n.d | 4 |
dT5 | 100 g/L EG | 25 ± 2 | 120 ± 10 | n.d. |
dT5 | 200 g/L EG | 15 ± 1 | 160 ± 10 | n.d. |
dT5 | 300 g/L EG | 10 ± 3 | 230 ± 10 | 510 |
dT5 | 100 g/L PEG1 | 23 ± 1 | 100 ± 10 | n.d. |
dT5 | 200 g/L PEG1 | 13 ± 1 | 100 ± 10 | n.d. |
dT5 | 300 g/L PEG1 | 7 ± 1 | 110 ± 5 | 270 |
dT5 | 100 g/L glucose | 29 ± 1 | 40 ± 10 | n.d. |
dT5 | 200 g/L glucose | 18 ± 1 | 40 ± 10 | n.d. |
dT5 | 300 g/L glucose | 10 ± 3 | 40 ± 5 | 130 |
dT5 | 100 g/L Dex20 | 27 ± 2 | 70 ± 20 | 190 |
dT5 | 200 g/L Dex20 | 8 ± 1 | 85 ± 5 | 50 |
dT5 | 300 g/L PEG1 | 7 ± 1 | 110 ± 5 | 266 |
dT6 | 300 g/L PEG1 | 7.8 ± 0.1 | 10 ± 1 | 40 |
dT7 | 300 g/L PEG1 | 7.5 ± 0.1 | 3.1 ± 0.3 | 13 |