Figure 5 | Scientific Reports

Figure 5

From: Revealing Escherichia coli type II l-asparaginase active site flexible loop in its open, ligand-free conformation

Figure 5

Dynamics of APO and EcAII-ASP. Root-mean-square deviation of atomic positions along the simulation: (a) on all Cα of l-asparaginase without (APO) and with l-Asp present in the catalytic site. (b) Same as a without the Cα that belong to the catalytic loop. (c) Catalytic loop without l-Asp in the catalytic site (APO form). (d) Same as (c) with l-Asp in the catalytic site (HOLO form). (e) and (f) Distance Fluctuation matrices for EcAII with (f) and without (e) l-Asp in the catalytic site.

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