Table 3 Pattern of association between gene pathways and increased concentrations of multiple particulate matter pollutants at multiple lag times (bold-upregulated, italics-downregulated).
From: The effect of air pollution on the transcriptomics of the immune response to respiratory infection
Gene pathway name | BC (lag) | DC (lag) | AMP (lag) | PM2.5 (lag) | UFP (lag) |
|---|---|---|---|---|---|
Establishment_of_protein_localization_to_endoplasmic_reticulum | 21–27 | 7–13 | 0–6 | 7–13 | 14–20 |
Ribosomal_subunit | 21–27 | 7–13 | 0–6 | 7–13 | 14–20 |
Structural_constituent_of_ribosome | 21–27 | 7–13 | 0–6 | 7–13 | 14–20 |
Specific_granule_lumen | 21–27 | 0–6 | 0–6 | 0–6 | |
Cotranslational_protein_targeting_to_membrane | 21–27 | 7–13 | 0–6 | 14–20 | |
Cytosolic_large_ribosomal_subunit | 21–27 | 7–13 | 0–6 | 7–13 | |
Cytosolic_ribosome | 21–27 | 7–13 | 0–6 | 14–20 | |
Ferric_iron_binding | 0–6 | 21–27 | 21–27 | 0–6 | |
Ferrous_iron_binding | 0–6 | 21–27 | 21–27 | 0–6 | |
Large_ribosomal_subunit | 21–27 | 7–13 | 0–6 | 14–20 | |
Nuclear_transcribed_mrna_catabolic_process_nonsense_mediated_decay | 21–27 | 7–13 | 0–6 | 14–20 | |
Protein_localization_to_endoplasmic_reticulum | 21–27 | 7–13 | 0–6 | 14–20 | |
Protoporphyrinogen_Ix_biosynthetic_process | 0–6 | 21–27 | 0–6 | 0–6 | |
Protoporphyrinogen_Ix_metabolic_process | 0–6 | 21–27 | 0–6 | 0–6 | |
Ribosome | 21–27 | 7–13 | 0–6 | 14–20 | |
Translational_initiation | 21–27 | 7–13 | 0–6 | 14–20 | |
Catalytic_step_2_spliceosome | 0–6 | 21–27 | 14–20 | ||
Mitochondrial_translation | 0–6 | 21–27 | 7–13 | ||
U2_type_catalytic_step_2_spliceosome | 0–6 | 21–27 | 7–13 | ||
U2_type_spliceosomal_complex | 0–6 | 21–27 | 7–13 | ||
Nuclear_transcribed_mrna_catabolic_process | 21–27 | 0–6 | 14–20 | ||
Translation_preinitiation_complex | 14–20 | 0–6 | 7–13 | ||
Specific_granule | 0–6 | 0–6 | 0–6 | ||
Small_ribosomal_subunit | 21–27 | 7–13 | 14–20 | ||
Cytoplasmic_translation | 21–27 | 14–20 | 14–20 | ||
Cytosolic_small_ribosomal_subunit | 21–27 | 7–13 | 14–20 | ||
Protein_targeting_to_membrane | 21–27 | 7–13 | 14–20 | ||
Viral_gene_expression | 21–27 | 7–13 | 14–20 | ||
Cytoplasmic_side_of_rough_endoplasmic_reticulum_membrane | 7–13 | 7–13 | |||
General_transcription_initiation_factor_activity | 21–27 | 21–27 | |||
Mitochondrial_gene_expression | 21–27 | 7–13 | |||
Myeloid_leukocyte_mediated_immunity | 0–6 | 7–13 | |||
Positive_regulation_of_double_strand_break_repair_via_homologous_recombination | 21–27 | 21–27 | |||
Secretory_granule_membrane | 0–6 | 7–13 | |||
Specific_granule_membrane | 0–6 | 0–6 | |||
Superoxide_anion_generation | 0–6 | 7–13 | |||
Tertiary_granule | 0–6 | 7–13 | |||
Autolysosome | 21–27 | 21–27 | |||
Oxidoreductase_activity_oxidizing_metal_ions | 21–27 | 21–27 | |||
Oxidoreductase_activity_oxidizing_metal_ions_oxygen_as_acceptor | 21–27 | 21–27 | |||
Regulation_of_ryanodine_sensitive_calcium_release_channel_activity | 21–27 | 21–27 | |||
T_cell_receptor_binding | 14–20 | 14–20 | |||
Mda_5_signaling_pathway | 0–6 | 0–6 | |||
Polysomal_ribosome | 21–27 | 14–20 | |||
Polysome | 21–27 | 21–27 | |||
Cajal_body | 0–6 | 14–20 | |||
Lewy_body | 0–6 | 0–6 | |||
Porphyrin_containing_compound_metabolic_process | 0–6 | 0–6 | |||
Regulation_of_mitochondrial_electron_transport_nadh_to_ubiquinone | 0–6 | 0–6 | |||
Spectrin_associated_cytoskeleton | 0–6 | 0–6 | |||
Hemoglobin_metabolic_process | 7–13 | 0–6 | |||
Purine_deoxyribonucleotide_binding | 0–6 | 0–6 |