Table 2 SNP performance in the Axiom array, according to the method of SNP discovery in each species.

From: Development of a multi-species SNP array for serrasalmid fish Colossoma macropomum and Piaractus mesopotamicus

Species

Method

Putative SNPs

Selected SNPs

Polymorphic SNPs

Conversion rate

MAF

Pacu

RNA-Seq

80,004

8052

5842

0.72

0.254

RADseq

43,355

17,932

13,345

0.74

0.175

ddRADseq

7044

3628

2776

0.76

0.160

Total

130,403

29,612

21,963

0.74

0.203

Tambaqui

RNA-Seq

18,282

1446

480

0.33

0.234

GBS

6803

2200

1888

0.85

0.237

ddRADseq

56,763

25,929

18,704

0.72

0.260

Total

81,848

29,575

21,072

0.71

0.247

Back to article page