Table 2 Comparison of plant development, hormone and stress-responsive cis-regulatory elements (CREs) in the promoter regions of Arabidopsis and rice WRKY, MADS-box, and MYB orthologous gene pairs.

From: Comparative genome-wide analysis of WRKY, MADS-box and MYB transcription factor families in Arabidopsis and rice

Clade

Gene identifier

Name

CRE function

Development

Hormone response

Abiotic/biotic stress

2

LOC_Os11g43740

OsMADS68

N//A

CGTCA-motif, TGACG-motif, ABRE, ABRE3a, ABRE4

G-box

AT1G18750

AtAGL65

N/A

ABRE

S-box, GT1-motif, MBS, MYB, STRE, TCT-motif

1

LOC_Os07g37210

OsMYB102

C-box, O2-site

ABRE3a, ABRE4, CGTCA-motif, TGACG-motif, O2-site

C-box, Sp1

AT4G28110

AtMYB41

CAT-box

N/A

MBS, MYC, MYB

2

LOC_Os04g39470

OsMYB80

Motif I, AP-2 like

ABRE3a, ABRE4, CGTCA-motif, TGACG-motif

G-box, GC-motif, Sp1

AT5G56110

AtMYB80

As-1

ABRE, As-1

MYB, MYC, STRE, TCT-motif, W-box

4

LOC_Os01g50110

OsMYB13

N/A

CGTCA-motif, TGACG-motif

GC-motif, Sp1

AT3G13540

AtMYB5

N/A

ABRE

TCT-motif, MYC, AE-box, GT1-motif, MYB

LOC_Os03g29614

OsMYB46

N/A

ABRE, CGTCA-motif, TGACG-motif

G-box, I-box, CCAAT-box

AT5G35550

AtMYB123

N/A

N/A

MYC, GATA-motif, MYB

5

LOC_Os12g33070

OsMYB122

AP-2 like

CGTCA-motif, TGACG-motif

ARE, G-box, GC-motif, I-box, Sp1

AT5G12870

AtMYB46

As-1

As-1

S-box, MBS, MYB, STRE, W-box

LOC_Os08g05520

OsMYB93

O2-site

CGTCA-motif, TGACG-motif, O2-site

G-box, GC-motif, Sp1

AT1G63910

AtMYB103

As-1, CAT-box

ABRE, As-1

AE-box, GATA-motif, MYB, MYC

10

LOC_Os04g46384

OsMYB58

N/A

ABRE, CGTCA-motif, TGACG-motif

G-box, Sp1

AT3G60460

AtMYB125

As-1

ABRE, As-1

W-box, MYC, MYB, sbp-CMA1c

LOC_Os01g63160

OsMYB19

GCN4_motif

ABRE, CGTCA-motif, TGACG-motif

ARE, GC-motif, I-box, LTR, P-box, Sp1

AT3G09230

AtMYB1

As-1

As-1

AE-box, GT1-motif, MBS, MYB, MYC, STRE

12

LOC_Os04g28090

OsMYB50

N/A

ABRE3a, ABRE4

ARE, G-box, P-box, Sp1

AT1G09770

AtMYBCDC5

As-1, CAT-box

As-1

GATA-motif, STRE, TCT-motif, W-box

LOC_Os12g38400

OsMYB125

C-box, AP-2 like

CGTCA-motif, TGACG-motif

C-box, CCAAT-box, G-box, Sp1

AT2G37630

AtMYB91

As-1, CAT-box

ABRE, JERE

AE-box, MYB, MYC, STRE

13

LOC_Os07g04700

OsMYB87

AP-2 like

ABRE3a, ABRE4, CGTCA-motif, TGACG-motif

LTR, P-box, Sp1

AT3G18100

AtMYB4R1

As-1

As-1

GT1-motif, MBS, MYB, MYC, TCT-motif

1

LOC_Os01g54600

OsWRKY13

N/A

CGTCA-motif, TGACG-motif

GC-motif, G-box

AT1G29280

AtWRKY65

As-1

ABRE, As-1

MYB, MYC, STRE

4

LOC_Os02g53100

OsWRKY32

N/A

ABRE, CGTCA-motif, TGACG-motif

G-box, CCAAT-box, Sp-1

AT1G68150

AtWRKY9

As-1

ABRE, As-1

AE-box, G-box, MYB, MYC

5

LOC_Os01g60490

OsWRKY22

O2-site

ABRE, ABRE3a, ABRE4, CGTCA-motif, TGACG-motif, O2-site

Box II

AT2G40740

AtWRKY55

As-1, CAT-box

ABRE, As-1

AE-box, S-box, GT1-motif, MYB, MYC, W-box

7

LOC_Os07g39480

OsWRKY87

GCN4_motif, O2-site

CGTCA-motif, TGACG-motif, O2-site

ARE, GC-motif

AT4G26640

AtWRKY20

As-1

ABRE, As-1

AE-box, S-box, G-box, GATA-motif, MBS, MYB, MYC, STRE, TCT-motif, W-box

LOC_Os08g17400

OsWRKY89

O2-site

ABRE, CGTCA-motif, TGACG-motif, O2-site

CCAAT-box, Sp1

AT4G30935

AtWRKY32

As-1

As-1

GATA-motif, GT1-motif, MBS, MYB, MYC, W-box

LOC_Os01g62510

OsWRKY119

N/A

ABRE3a, ABRE4, CGTCA-motif, TGACG-motif

ARE, G-box, GC-motif, Sp1

AT2G37260

AtWRKY44

As-1

As-1

MBS, MYC, STRE, TCT-motif, W-box

8

LOC_Os01g74140

OsWRKY17

N/A

CGTCA-motif, TGACG-motif

ARE, G-box, Sp1, GC-motif

AT5G43290

AtWRKY49

As-1

ABRE, As-1

S-box, DRE core, Gap-box, MYB, MYC, STRE

LOC_Os01g53260

OsWRKY23

AP-2 like

CGTCA-motif, TGACG-motif

G-box, Sp1

AT2G46130

AtWRKY43

As-1

ABRE, As-1

MYB, MYC

LOC_Os11g29870

OsWRKY72

N/A

CGTCA-motif, TGACG-motif

CCAAT-box

AT5G13080

AtWRKY75

As-1

As-1

MYC, MYB, AE-box, G-box, STRE

9

LOC_Os05g45230

OsWRKY58

N/A

ABRE, CGTCA-motif, TGACG-motif

CCAAT-box, GC-motif, Sp1

AT4G12020

AtWRKY19

As-1, CAT-box

As-1

DRE core, MYB, MYC, STRE, W-box

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