Figure 3
Comparing the scores of Predector with EffectorP versions 1 and 2 for proteins in the testing dataset. Scatter plots in the lower-left corner indicate comparisons of predictive scores between methods, with predicted secreted proteins (any signal peptide and fewer than two TM domains predicted) indicated in yellow, and non-secreted proteins indicated in blue. Density plots along the diagonal indicate distributions of the full test dataset versus predictive scores for each method (indicated along the x-axis), also coloured by secretion prediction as before (Note: there are far more non-secreted than secreted proteins in the dataset). Scatter plots in the top-right corner indicate score comparisons between methods for confirmed effectors, coloured by whether they have been predicted as secreted (criteria as above), or additionally predicted by EffectorP versions 1 or 2. Two proteins that are misclassified by a Predector score > 0 are labelled in the top-right subplot.
