Table 3 Long-read (ONT) sequencing summary and haplogroup classification results for the samples. The results of the short-read whole-genome sequencing (WGS) mtDNA classification are also shown.

From: A benchmarking of human mitochondrial DNA haplogroup classifiers from whole-genome and whole-exome sequence data

Samples

ONT sequencing

Variant-calling

Reference-based assembly

De novo assembly

Hybrid de novo assembly

Short-read WGS

Mapped reads

Depth of coverage

Variants

Haplogroup

Variants

Haplogroup

Variants

Haplogroup

Variants

Haplogroup

Variants

Haplogroup

CAN03

3,065

581

14

H1ao1

69

H1ao1

119

H1ao1

16

H1ao1

14

H1ao1

CAN06

2,981

566

36

J2a2d

141

J2a2d

154

J2a2d

46

J2a2d

44

J2a2d

CAN07

2,343

444

15

H6a1b2

132

H6a1b2

175

H6a1b

17

H6a1b2

14

H6a1b2

CAN09

2,126

358

33

U4c1

66

U4c1

602

U4c1

37

U4c1

37

U4c1

CAN17

4,209

821

10

H2a2

59

H + 16,189

41

H + 16,189

15

H + 16,189

12

H + 16,189

CAN23

1,737

532

29

K1a1b1

69

K1a1b1

78

K1a1b1

37

K1a1b1

35

K1a1b1

CAN31

1,776

398

20

U6b1a1

67

U6b1a1

119

U6b1a1

28

U6b1a1

26

U6b1a1

CAN34

4,256

910

34

L3f1b1a

90

L3f1b1a

174

L3f1b1a

42

L3f1b1a

43

L3f1b1a

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