Table 4 Assembly summary of assembled Cps reads that were pre-identified by BLASTN in samples G10, G11 and G12, and of reference genome CBS139395.

From: Metagenomic sequencing for detection and identification of the boxwood blight pathogen Calonectria pseudonaviculata

 

Assembled Cps

CBS139395

Assembly size (bp)

49,048,547

54,975,240

Number of contigs

1,055

27

Maximum contig length (bp)

419,837

5,578,780

N50 contig length (bp)

88,131

3,534,399

GC content (%)

48.12

46.36

Total aligned length (bp)

48,291,239

NA

Genome fraction (%)

88.746

NA

aAssembly BUSCO coverage (%)

C:50.3; F:23.2; M:26.5

C:96.6; F:0.2; M:3.2

  1. aFor BUSCO coverage, C stands for complete BUSCOs, F stands for fragmented BUSCOs, and M stands for missing BUSCOs.
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