Table 4 Proportions of reads supporting insertions.

Whole-genome NGS

AHNAK^b

Sample 1

36,170/42,760

 ~ 85%

Sample 2

4,770/23,410

 ~ 20%

HEV–RdRp^a

Sample 1

1,360/42,760

 ~ 3%

Sample 2

5,590 /23,410

 ~ 24%

Amplicon-based NGS

AHNAK^b

Sample 1

620/15,980

 ~ 4%

Sample 1b

31,840/135,350

 ~ 23%

RPL18^c, variant 1

Sample 1

5,210/15,980

 ~ 33%

Sample 1b

47,220/135,350

 ~ 35%

RPL18-2^c, variant 2

Sample 1

0

0%

Sample 1b

1,580/135,350

 ~ 1%

HEV–RdRp^a

Sample 1

20/15,980

 < 1%

Sample 1b

1,280/135,350

 ~ 1%

HEV–HVR^a

Sample 1

0

0%

Sample 1b

814/135,350

 < 1%