Figure 3

Core genome SNP typing of capsulated H. influenzae genomes. Each dot reflects the number of SNPs found in serotype a, b, c, d, e, and f genomes compared to the reference genomes NML-Hia-1 [CC23] (NZ_CP017811.1), 10810 [CC6] (NC_016809.1), M12125 [CC7] (SRR9847495), PTHi-10983 [CC10] (ERR2560729), M15895 [CC18] (NZ_CP031249.1), and KR494 [CC124] (NC_022356.1), respectively. Split violin plots show the distribution of the genomes based on the number of SNPs by each serotype.