Table 1 Distribution and frequency of single nucleotide polymorphisms (SNPs) identified using the genotyping-by-sequencing.
Chromosome | Chromosome length (bp) | Number of SNP in chromosome | Average distance between SNPs (bp) |
|---|---|---|---|
1 | 258,396,435 | 24,121 | 10,713 |
2 | 224,508,944 | 13,802 | 16,266 |
3 | 70,575,877 | 8805 | 8015 |
4 | 67,241,588 | 6726 | 9997 |
5 | 49,315,034 | 8784 | 5614 |
6 | 39,338,091 | 7383 | 5328 |
7 | 36,994,609 | 5184 | 7136 |
8 | 35,905,232 | 4584 | 7833 |
9 | 30,537,433 | 3428 | 8908 |
10 | 29,494,005 | 3861 | 7639 |
11 | 25,713,836 | 2204 | 11,667 |
12 | 26,363,526 | 3707 | 7112 |
13 | 25,495,552 | 2286 | 11,153 |
14 | 22,079,116 | 2000 | 11,040 |
15 | 20,647,704 | 3648 | 5660 |
16 | 16,685,943 | 5094 | 3276 |
17 | 11,213,544 | 3806 | 2946 |
18 | 9,947,944 | 2458 | 4047 |
19 | 4,661,377 | 1636 | 2849 |
Total | 1,005,115,790 | 113,517 | 8854 |
