Table 2 Comparison of the microbial relative abundances between pairwise groups according to renal stone status at the phylum, class, order, family, and genus levels.

From: Gut microbiota and the prevalence and incidence of renal stones

Taxonomic assignment

Wb (coefficientsc)

G0† vs. G1

G0† vs. G2

G1† vs. G2

p__Actinobacteriota

14 (–0.30*)

1 (–0.22)

0

p__Actinobacteriota; c__Actinobacteria

15 (–0.22*)

0 (–0.16)

0

p__Actinobacteriota; c__Coriobacteriia

14 (–0.21*)

0 (–0.15)

0

p__Fusobacteriota; c__Fusobacteria

7 (0.15*)

14 (0.22**)

0

p__Actinobacteriota; c__Actinobacteria; o__Bifidobacteriales

32 (–0.23*)

0 (–0.17)

0

p__Actinobacteriota; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae

54 (–0.23*)

0 (–0.17)

0

p__Firmicutes; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__[Eubacterium]_eligens_group

0 (–0.05)

230 (–0.33**)

0

p__Firmicutes; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__Dorea

210 (–0.25**)

0 (–0.14)

0

p__Firmicutes; c__Clostridia; o__Oscillospirales; f__Ruminococcaceae; g__Incertae_Sedis

206 (–0.25**)

0 (0.03)

0

p__Firmicutes; c__Negativicutes; o__Veillonellales-Selenomonadales; f__Veillonellaceae; g__Dialister

0 (0.05)

201 (–0.28*)

0

p__Actinobacteriota; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium

190 (–0.23*)

0 (–0.17)

0

p__Firmicutes; c__Negativicutes; o__Acidaminococcales; f__Acidaminococcaceae; g__Phascolarctobacterium

0 (0.13)

176 (0.31*)

0

p__Firmicutes; c__Bacilli; o__Erysipelotrichales; f__Erysipelatoclostridiaceae; g__Erysipelatoclostridium

0 (0.02)

171 (0.20*)

0

p__Firmicutes; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__uncultured

170 (–0.22**)

0 (0.00)

0

p__Firmicutes; c__Clostridia; o__Oscillospirales; f__Ruminococcaceae; g__Faecalibacterium

159 (–0.11*)

0 (–0.07)

0

  1. p__: phylum, c__: class, o__: order, f__: family, g__: genus, s__: species, G0: no renal stone group, G1: incidental renal stone group, G2: prevalent renal stone group.
  2. aNumber of phyla, 15; classes, 23; orders, 50; families, 89; genera, 260.
  3. bW = X for taxon k, then H0k is rejected X times. The W statistics for the significantly different taxa relative to over 60% of the other taxa at each taxon level are represented in bold.
  4. cCoefficients for the log-transformed relative abundance of each taxon in the linear model adjusted for age, sex, and BMI using MaAsLin2 on pairwise comparisons between groups. * p < 0.05, ** p < 0.01.
  5. †Group used as the reference group in the regression model.
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