Table 2 Average membership proportions Qi in their original sampling group (in bold) with 90% confidence intervals (CI) for the five canid groups and the first two generations of simulated hybrids, estimated from the Bayesian assignment analyses performed in Structure 2.3.460, assuming K = 5 clusters and using the “Admixture” and “Independent allele frequencies” models as parameter settings.

From: A reduced SNP panel to trace gene flow across southern European wolf populations and detect hybridization with other Canis taxa

 

Populations

N

QJ (90% CI)

QD (90% CI)

QWDIN (90% CI)

QWIB (90% CI)

QWIT (90% CI)

Parentals

Jackals

21

0.998

(0.990–1.000)

0.000

(0.000–0.002)

0.001

(0.000–0.003)

0.001

(0.000–0.005)

0.000

(0.000–0.002)

Domestic dogs

52

0.002

(0.000–0.014)

0.992

(0.965–1.000)

0.002

(0.000–0.013)

0.002

(0.000–0.015)

0.002

(0.000–0.011)

Dinaric wolves

30

0.001

(0.000–0.008)

0.001

(0.000–0.005)

0.989

(0.957–1.000)

0.006

(0.000–0.030)

0.003

(0.000–0.014)

Iberian wolves

25

0.001

(0.000–0.006)

0.000

(0.000–0.003)

0.002

(0.000–0.013)

0.996

(0.978–1.000)

0.001

(0.000–0.005)

Italian wolves

30

0.000

(0.000–0.003)

0.000

(0.000–0.003)

0.001

(0.000–0.004)

0.001

(0.000–0.004)

0.998

(0.989–1.000)

Simulated F1

D-WIT

10

0.003

(0.000–0.017)

0.492

(0.431–0.553)

0.004

(0.000–0.025)

0.006

(0.000–0.028)

0.496

(0.431–0.559)

J-WIT

10

0.503

(0.431–0.574)

0.000

(0.000–0.003)

0.002

(0.000–0.011)

0.002

(0.000–0.012)

0.493

(0.422–0.565)

WIT-WDIN

10

0.002

(0.000–0.009)

0.001

(0.000–0.004)

0.485

(0.395–0.574)

0.005

(0.000–0.031)

0.508

(0.422–0.594)

WIT-WIB

10

0.001

(0.000–0.006)

0.000

(0.000–0.003)

0.006

(0.000–0.039)

0.501

(0.419–0.580)

0.492

(0.414–0.569)

D-WDIN

10

0.003

(0.000–0.018)

0.502

(0.437–0.567)

0.482

(0.398–0.555)

0.009

(0.000–0.054)

0.004

(0.000–0.027)

J-WDIN

10

0.500

(0.407–0.593)

0.000

(0.000–0.002)

0.496

(0.401–0.589)

0.003

(0.000–0.020)

0.001

(0.000–0.006)

WDIN-WIB

10

0.001

(0.000–0.008)

0.000

(0.000–0.003)

0.496

(0.367–0.627)

0.501

(0.370–0.630)

0.001

(0.000–0.008)

D-WIB

10

0.007

(0.000–0.037)

0.488

(0.424–0.552)

0.010

(0.000–0.058)

0.492

(0.408–0.564)

0.004

(0.000–0.023)

J-WIB

10

0.512

(0.419–0.604)

0.000

(0.000–0.002)

0.003

(0.000–0.015)

0.485

(0.391–0.579)

0.001

(0.000–0.004)

D-J

10

0.501

(0.436–0.564)

0.490

(0.430–0.552)

0.003

(0.000–0.021)

0.004

(0.000–0.025)

0.002

(0.000–0.010)

Simulated BC1

D-WIT-WIT

10

0.002

(0.000–0.012)

0.224

(0.175–0.275)

0.004

(0.000–0.029)

0.004

(0.000–0.027)

0.766

(0.710–0.816)

J-WIT-WIT

10

0.226

(0.167–0.290)

0.001

(0.000–0.003)

0.002

(0.000–0.010)

0.002

(0.000–0.010)

0.770

(0.707–0.829)

J-WIT-J

10

0.772

(0.709–0.831)

0.000

(0.000–0.002)

0.002

(0.000–0.011)

0.002

(0.000–0.012)

0.224

(0.166–0.286)

WIT-WDIN

10

0.002

(0.000–0.010)

0.001

(0.000–0.003)

0.213

(0.137–0.291)

0.005

(0.000–0.035)

0.780

(0.705–0.849)

WIT-WDIN

10

0.001

(0.000–0.007)

0.000

(0.000–0.003)

0.763

(0.680–0.838)

0.004

(0.000–0.025)

0.232

(0.158–0.311)

WIT-WIB-WIT

10

0.001

(0.000–0.008)

0.000

(0.000–0.003)

0.013

(0.000–0.081)

0.226

(0.130–0.303)

0.760

(0.689–0.826)

WIT-WIB-WIB

10

0.001

(0.000–0.008)

0.000

(0.000–0.003)

0.014

(0.000–0.070)

0.723

(0.638–0.798)

0.261

(0.192–0.334)

D-WDIN-WDIN

10

0.003

(0.000–0.017)

0.247

(0.194–0.304)

0.737

(0.661–0.798)

0.008

(0.000–0.051)

0.005

(0.000–0.027)

J-WDIN-WDIN

10

0.240

(0.161–0.325)

0.000

(0.000–0.003)

0.754

(0.666–0.835)

0.004

(0.000–0.026)

0.001

(0.000–0.010)

J-WDIN-J

10

0.756

(0.674–0.833)

0.000

(0.000–0.003)

0.240

(0.162–0.323)

0.003

(0.000–0.017)

0.001

(0.000–0.006)

WDIN-WIB-WDIN

10

0.001

(0.000–0.009)

0.000

(0.000–0.004)

0.746

(0.619–0.864)

0.250

(0.132–0.377)

0.002

(0.000–0.013)

WDIN-WIB-WIB

10

0.001

(0.000–0.008)

0.000

(0.000–0.003)

0.167

(0.054–0.286)

0.827

(0.711–0.927)

0.004

(0.000–0.027)

D-WIB-WIB

10

0.002

(0.000–0.014)

0.243

(0.191–0.298)

0.005

(0.000–0.030)

0.746

(0.682–0.803)

0.004

(0.000–0.026)

J-WIB-WIB

10

0.226

(0.148–0.311)

0.000

(0.000–0.002)

0.002

(0.000–0.012)

0.771

(0.685–0.850)

0.001

(0.000–0.004)

J-WIB-J

10

0.758

(0.675–0.834)

0.000

(0.000–0.002)

0.002

(0.000–0.014)

0.239

(0.162–0.322)

0.001

(0.000–0.004)

D-J-J

10

0.758

(0.704–0.807)

0.237

(0.189–0.288)

0.002

(0.000–0.013)

0.002

(0.000–0.012)

0.001

(0.000–0.008)

  1. Data comprise the 192-SNP genotypes of the parental populations (jackals, dogs, Dinaric, Iberian and Italian wolves), their first-generation hybrids (F1) and the first backcross (BC1) of simulated admixed genotypes. J = jackal, D = dog, W = wolf, IT = Italy, DIN = Dinaric, IB = Iberia. Average Qi were obtained concatenating the data from the five independent runs using Clumpp 1.1.162.
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