Table 3 The number of SVs detected with a breakpoint precision of 100 bp by the software grouped by SV types in two simulated datasets.

From: Detecting structural variations with precise breakpoints using low-depth WGS data from a single oxford nanopore MinION flowcell

 

# of Detected SVs for the 10 implanted SVs

SENSV

NanoVar

Sniffles

SVIM

cuteSV

Difficult cases

 

Long deletion (> 100 kbp)

9

6

3 (4)

5 (6)

3

Duplication

8

4

4

5

4

Terminal deletion

7

0

0

2

3

Unbalanced translocation

7

2

3

2

3

Others

 

Short deletion (< 100 kbp)

10

4

7

10

6

Inversion

9

9

9

5

8

Balanced translocation

8

8

7

3

7

  1. The number in the parentheses is the number of SVs detected with a breakpoint precision of 2000 bp. Each type has total 10 SVs implanted in two simulated datasets.
  2. The best results of a row are in bold.
Back to article page