Table 1 Agreement between proposed Synthetic Boolean model and experimental data from the literature in HeLa cells.

From: Dynamical modeling of miR-34a, miR-449a, and miR-16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells

Stimulus/perturbations

Response/phenotype

References

Transfection of miR-16

Induction of autophagy, apoptosis and senescence

7

Knockdown (KO) of mTORC2

Autophagy

7

Knockdown (KO) of mTORC1

Induction of autophagy, apoptosis and senescence

7

Transfection of miR-449a

Induction of apoptosis and senescence

2

Transfection of miR-34a

Induction of apoptosis and senescence

2

Knockdown (KO) of PACS1

Induction of apoptosis and senescence

2

Synergistic regulation between miR-34 E1 and miR-449a E1

Induction of senescence, autophagy and apoptosis

?

Synergistic regulation between miR-16 E1 and miR-449a E1

Induction of autophagy, apoptosis and senescence

?

Synergistically overexpression (E1) of miR-449a/miR-34a/miR-16

Inhibits proliferation on the functional and stable G1/S checkpoint

?

Targeting of Cdc25A by miR-16/miR-34a/miR-449a

Repression of proliferation through the induction of DNA Damage Response pathways

?

Knockdown (KO) of PACS1

Repression of proliferation through the induction of autophagy along with apoptosis and senescence

?

Transfection of miR-34a

Inhibition of proliferation and induction of senescence, autophagy and apoptosis

?

  1. Ectopic expression (E1) represents gain of function (GoF) (or transfection of miRNA) and Knockdown (KO) represents loss of function (LoF) of the corresponding molecule. Cases for which no experimental data were found are indicated by ‘?’.