Figure 4 | Scientific Reports

Figure 4

From: Recovery of mitogenomes from whole genome sequences to infer maternal diversity in 1883 modern taurine and indicine cattle

Figure 4

Subgrouping animals under I haplogroup into I2, I1 and subgroups within I1 (I1-Orig, I1a and I1b) using conventional Maximum Likelihood method (a) and alternate clustering techniques: principal component analysis (b), Admixture software (c) and hierarchical clustering based on the number of nucleotide difference between the sequences of pair of animals (d). *Base pair position of private variants relative to ARS-UCD1.2_M. I1-Orig is group of animals under previous I1 haplogroup not assigned to either I1a or I1b (i.e., remaining animals in I1 Cluster1).

Back to article page