Table 8 Empirical accuracy of imputing sporadic missing genotypes in mitogenomes. Number of correctly imputed genotypes (percentage correct in brackets) on the diagonals and number of genotypes wrongly imputed shown on the off-diagonals. Assessment was based on randomly masking of 10% of positions (307) per animal in 20% of animals (333).

From: Recovery of mitogenomes from whole genome sequences to infer maternal diversity in 1883 modern taurine and indicine cattle

Imputed genotype

Original genotype

 Total genotypes corectly imputed

0|0

0|1

0|2

1|1

2|2

3|3

0|0

101,089

39

 

73

 

1

 
 

(99.9%)

      

0|1

37

82

 

11

   
  

(65.6%)

     

0|2

2

 

3

 

2

  
   

(100%)

    

1|1

64

4

 

800

1

  
    

(90.4%)

   

2|2

4

  

1

16

  
     

(84.2%)

  

3|3

     

2

 
      

(67.0%)

 

Total

101,196

125

3

885

19

3

 
       

101,992/102,231 (99.8%)

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