Table 2 Average genotype quality scores for FFPE samples.

From: Organocatalyst treatment improves variant calling and mutant detection in archival clinical samples

 

FFPE DNA (no ORG∆)

FFPE DNA (ORG∆)

FFPE RNA (ORG∆)

Concordant

279.44 (± 532.35)

384.93 (± 698.60)

37.94 (± 109.43)

Unique

12.34 (± 22.96)

48.39 (± 226.31)

22.82 (± 33.12)

  1. Genotype quality scores for FFPE samples were averaged for SNPs marked as in agreement with the corresponding frozen sample SNPs (concordant) or unique to the FFPE samples. Standard deviation values are given in parentheses. ORG∆ indicates organocatalyst-treated samples. FFPE data were combined from 12-h kidney FFPE, 12-h ovary FFPE, and 72-h ovary FFPE samples.
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