Table 2 The edgecounts of the targets in the PPI network.
From: Network pharmacology of iridoid glycosides from Eucommia ulmoides Oliver against osteoporosis
NO | Gene name | Protein name | Edgecount | NO | Gene name | Protein name | Edgecount |
|---|---|---|---|---|---|---|---|
1 | AKT1 | Protein kinase | 67 | 48 | HDAC4 | Histone deacetylase 4 | 15 |
2 | TNF | Tumor necrosis factor | 59 | 49 | BCL2A1 | Bcl-2-related protein A1 | 15 |
3 | VEGFA | Vascular endothelial growth factor A | 58 | 50 | TLR9 | Toll-like receptor 9 | 15 |
4 | IL6 | Interleukin-6 | 56 | 51 | TOP1 | DNA topoisomerase 1 | 14 |
5 | MAPK3 | Mitogen-activated protein kinase 3 | 54 | 52 | AKR1B1 | Aldo–keto reductase family 1 member B1 | 14 |
6 | CASP3 | Caspase-3 | 54 | 53 | MIF | Macrophage migration inhibitory factor | 13 |
7 | IL1B | Interleukin-1 beta | 53 | 54 | BCL2 | Apoptosis regulator Bcl-2 | 13 |
8 | TP53 | Cellular tumor antigen p53 | 53 | 55 | MMP8 | Neutrophil collagenase | 12 |
9 | JUN | Transcription factor AP-1 | 50 | 56 | ADORA2A | Adenosine receptor A2a | 11 |
10 | EGFR | Epidermal growth factor receptor | 49 | 57 | RPS6KA3 | Ribosomal protein S6 kinase alpha-3 | 11 |
11 | PTGS2 | Prostaglandin G/H synthase 2 | 45 | 58 | LGALS4 | Galectin-4 | 10 |
12 | HSP90AA1 | Heat shock protein HSP 90-alpha | 45 | 59 | MGAM | Maltase-glucoamylase, intestinal | 10 |
13 | ESR1 | Estrogen receptor | 45 | 60 | PTGS1 | Prostaglandin G/H synthase 1 | 10 |
14 | MMP9 | Matrix metalloproteinase-9 | 44 | 61 | ADA | Adenosine deaminase | 8 |
15 | HRAS | GTPase HRas | 40 | 62 | ADORA3 | Adenosine receptor A3 | 8 |
16 | NOS3 | Nitric oxide synthase, endothelial | 39 | 63 | SELL | L-selectin | 8 |
17 | SIRT1 | NAD-dependent protein deacetylase sirtuin-1 | 37 | 64 | MMP12 | Macrophage metalloelastase | 8 |
18 | BCL2L1 | Bcl-2-like protein 1 | 35 | 65 | EDNRA | Endothelin-1 receptor | 7 |
19 | RELA | Transcription factor p65 | 34 | 66 | MGEA5 | Protein O-GlcNAcase | 7 |
20 | MAPK1 | Mitogen-activated protein kinase 1 | 33 | 67 | P2RY2 | P2Y purinoceptor 2 | 6 |
21 | MAPK14 | Mitogen-activated protein kinase 14 | 33 | 68 | TYR | Tyrosinase | 6 |
22 | MMP2 | 72 kDa type IV collagenase | 32 | 69 | GLP1R | Glucagon-like peptide 1 receptor | 6 |
23 | GSK3B | Glycogen synthase kinase-3 beta | 31 | 70 | NR2F2 | COUP transcription factor 2 | 6 |
24 | CASP9 | Caspase-9 | 31 | 71 | PSEN2 | Presenilin-2 | 6 |
25 | MCL1 | Induced myeloid leukemia cell differentiation protein Mcl-1 | 31 | 72 | GBA | Lysosomal acid glucosylceramidase | 6 |
26 | VCAM1 | Vascular cell adhesion protein 1 | 29 | 73 | PNP | Purine nucleoside phosphorylase | 5 |
27 | SOD1 | Superoxide dismutase | 27 | 74 | SLC6A3 | Sodium-dependent dopamine transporter | 5 |
28 | CDK2 | Cyclin-dependent kinase 2 | 25 | 75 | PYGM | Glycogen phosphorylase, muscle form | 5 |
29 | PTPN1 | Tyrosine-protein phosphatase non-receptor type 1 | 24 | 76 | PTPN2 | Tyrosine-protein phosphatase non-receptor type 2 | 5 |
30 | PIK3CA | PI3-kinase subunit alpha | 24 | 77 | S1PR2 | Sphingosine 1-phosphate receptor 2 | 5 |
31 | HSPA5 | Endoplasmic reticulum chaperone BiP | 24 | 78 | DYRK1A | Dual specificity tyrosine-phosphorylation-regulated kinase 1A | 4 |
32 | NOS2 | Nitric oxide synthase, inducible | 23 | 79 | CA2 | Carbonic anhydrase 2 | 3 |
33 | CCNA2 | Cyclin-A2 | 22 | 80 | CYP2D6 | Cytochrome P450 2D6 | 3 |
34 | MMP3 | Stromelysin-1 | 22 | 81 | SLC5A1 | Sodium/glucose cotransporter 1 | 3 |
35 | MMP1 | Interstitial collagenase | 21 | 82 | NCSTN | Nicastrin | 3 |
36 | SELE | E-selectin | 21 | 83 | ATIC | Bifunctional purine biosynthesis protein ATIC | 2 |
37 | PTPN11 | Tyrosine-protein phosphatase non-receptor type 11 | 21 | 84 | CYP1A2 | Cytochrome P450 1A2 | 2 |
38 | MMP7 | Matrilysin | 20 | 85 | CA1 | Carbonic anhydrase 1 | 2 |
39 | FYN | Tyrosine-protein kinase Fyn | 20 | 86 | ALOX12 | Polyunsaturated fatty acid lipoxygenase ALOX12 | 2 |
40 | LGALS3 | Galectin-3 | 19 | 87 | ICMT | Protein-S-isoprenylcysteine O-methyltransferase | 2 |
41 | SIRT2 | NAD-dependent protein deacetylase sirtuin-2 | 17 | 88 | GAA | Lysosomal alpha-glucosidase | 2 |
42 | MMP13 | Collagenase 3 | 17 | 89 | PSENEN | Gamma-secretase subunit PEN-2 | 2 |
43 | DNMT1 | DNA (cytosine-5)-methyltransferase 1 | 17 | 90 | ADH1A | Alcohol dehydrogenase 1A | 1 |
44 | IGFBP3 | Insulin-like growth factor-binding protein 3 | 17 | 91 | FUCA1 | Tissue alpha-L-fucosidase | 1 |
45 | PLAT | Tissue-type plasminogen activator | 16 | 92 | MAG | Myelin-associated glycoprotein | 1 |
46 | NOS1 | Nitric oxide synthase, brain | 15 | 93 | GPR35 | G-protein coupled receptor 35 | 1 |
47 | SELP | P-selectin | 15 |