Table 3 Differentially expressed genes revealed by RNA-Seq of a yiaU knockout and wild type E. coli strains during growth in M9 medium supplemented with 7 mM l-threonine.

Locus tag	Gene name	P value	Base mean	log² fold change
b3584	yiaT	9.32E−07	26	2.8
b1787	yeaK	6.57E−10	57	− 4.4
b2036	glf	1.01E−09	2378	− 2.6
b2035	wbbH	1.63E−07	694	− 1.9
b3714	adeP	7.68E−05	357	− 1.32
b3213	gltD	0.000187	3158	− 1.27
b2028	ugd	0.005533	74	− 1.27
b3624	waaZ	5.06E−05	121	− 1.79
b3625	waaY	2.08E−05	178	− 1.77
b3622	waaL	3.53E−08	352	− 2.81
b3623	waaU	3.98E−05	129	− 1.72
b3629	waaS	1.84E−08	263	− 2.57
b3631	waaG	8.90E−05	140	− 1.61
b3630	waaP	0.001681	99	− 1.44
b3627	waaO	0.003191	199	− 1.22
b3628	waaB	3.78E−05	168	− 1.76

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