Table 6 Summary of the yTFs newly characterized in this study. Abbreviation: LPS-lipopolysaccharide.
yTF gene name | Number of DEGs | DNA binding sites (ChIP-exo/DNA-binding predicted) | Predicted roles | Related references |
|---|---|---|---|---|
YbdO | 86 | 2/1 ybdO | Citrate utilization related, Flagella biosynthesis | 2 |
YgfI | 1402 | 2/9 dhaK, pflB, adhE, hycBCDEF, narZ | Dihydroxyacetone, glycerol or Thr utilization | 2 |
YiaU | 674 | 9/5 waaPSBOJYZU (operon), yjiT, adeP, yiaT, gltD | Membrane modification/ LPS biosynthesis | 2 |
YcaN | 702 | 6/2, ycaC, ycaD | unknown | 2 |
YbhD | 238 | 1/2, ybhH, ybhI | L-malate utilization related | 2 |
YbeF | 67 | 3/- | Flagella biosynthesis, putative citrate utilization related | 2 |
YneJ | 121 | 9/2, sad, fnrS | Putrescine utilization related | 12–15, 17–19, 24–27 |
