Figure 3 | Scientific Reports

Figure 3

From: Whole genome sequencing of multidrug-resistant Mycobacterium tuberculosis isolates collected in the Czech Republic, 2005–2020

Figure 3

Minimum spanning tree based on SNP differences between the strains, including the XDR-TB and MDR-TB strains collected in Czech Republic during 2005 and 2020. Maximum distance set to 12 SNPs for linked transmission. Distant matrix generated from MTBseq (version 1.0.2, https://github.com/ngs-fzb/MTBseq_source) and a minimum spanning tree was constructed using GrapeTree software (https://achtman-lab.github.io/GrapeTree/MSTree_holder.html).

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