Table 1 Publicly available datasets used to identify genes encoding trehalose metabolizing enzymes in sugarcane.
From: Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane
Dataset/Abbreviation | Type of dataset | Variety—Species | Tissue | Sequencing technology | BioProject |
|---|---|---|---|---|---|
SCA555 | Expressed Sequence Tag (EST) | > 3 varieties (Including SP80-3280) | Different tissues | ABI sequencer | sucest-fun.org* |
SCA356 | Transcriptomic | SP80-3280 | Leaf | Illumina Hi-Seq2500 | PRJNA244522 |
SCA449 | Genomic | SP80-3280 | Leaf | Illumina HiSeq2000 | PRJNA272769 |
SAC2_1 and SAC2_247 | Transcriptomic | 10 varieties | Internode | Illumina HiSeq4000 | PRJNA356226 |
Transcriptomic | 22 varieties | Leaf, internode and root | PacBio | ||
SCA1_1 and SCA1_252 | Transcriptomic | R570 | leaves, roots, and stems | Illumina Hi-Seq2500 | ERZ654945** |
Genomics | R570, S. spontaneum and S. officinarum | BAC, PacBio and Illumina WGS | |||
SSP53 | Genomics | S. spontaneum | Leaf | BAC, Illumina HiSeq 2500, PacBio and Illumina HiSeq X Ten platform | PRJNA483885 |
